Basic Information | |
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Taxon OID | 3300005527 Open in IMG/M |
Scaffold ID | Ga0068876_10007181 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7521 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (80.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio, Lake Erie | |||||||
Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000808 | Metagenome / Metatranscriptome | 882 | Y |
F003393 | Metagenome / Metatranscriptome | 489 | Y |
F005348 | Metagenome / Metatranscriptome | 403 | Y |
F012455 | Metagenome / Metatranscriptome | 280 | Y |
F015434 | Metagenome / Metatranscriptome | 254 | Y |
F023275 | Metagenome / Metatranscriptome | 210 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068876_1000718112 | F012455 | GGA | MLNEIKNKIIRIQELRRSNAATPIPNKKKYTRKVKHKNGK* |
Ga0068876_1000718117 | F005348 | AGG | MINSVMAFDCNDCNGQGLIFWGNDLDYDVEKCDCKDFAIGTLFTSGEAN* |
Ga0068876_1000718121 | F000808 | AGGAG | MEYTYSLTTSYDGELINTLRVSDMLTAVDAWNKCVDYGFAKEYATYNLSDPTGKMYTKTFYANGEVSIK* |
Ga0068876_1000718124 | F003393 | GAG | MIDLENDDTIQIVDYVKADILTAGQLMIDDCIQVADEVVSIIDIVSLPDGYTLEVVNDFGERDIIEVGEYDQFDLMVLQ* |
Ga0068876_100071816 | F015434 | GGAGG | MESNYPEQWHRHTPKGMSIESTTTKSKKCCDTCECETTPDFNKLMETQTSFEE* |
Ga0068876_100071817 | F023275 | N/A | MAFLENLESSMADGDGMPSKKVTDAIKEMLEDPEHHKLMERLKYMEDHGI* |
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