NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10014079

Scaffold Ga0068876_10014079


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10014079 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5170
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014503Metagenome / Metatranscriptome262Y
F019433Metagenome229Y
F064393Metagenome / Metatranscriptome128Y
F088339Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0068876_100140791F019433N/AMVMAKTRVGTINEVLSTRARAVFPYRVNFDQIQLSQITEMADWCINNCKELWREEHYHALYFQFTDERDAVMFMLKFGGRGNV*
Ga0068876_1001407910F088339AGGAGMLFEAFLVFWMLEVLVLASVAVWYYYEPIEKEKKIWDPWGIWKEVK*
Ga0068876_100140794F014503AGGALKASVHHWRFEDGDTSPNPGNPFPLDPPPRGWYCWVYPEDDHAFEEWMKRTCPTADMCHRFNSGSPMWTVYIQDDIEATVFQLMWM*
Ga0068876_100140799F064393GGAGMDKWIKWYDSLPEHTREYLKHQPLWHDSDLAKAGLVGFVIGLILGLTV*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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