NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10033638

Scaffold Ga0068876_10033638


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10033638 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3182
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006545Metagenome / Metatranscriptome370Y
F012773Metagenome / Metatranscriptome277Y
F032263Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0068876_100336386F012773GGAGMEGGLLDESGECPLATQDETINKGNKQKAILTARYGPSEGEEKCGNCEYGMKLKGCGLGKDEVFCDVYQFKCSKENVCDAWESMEEDEED*
Ga0068876_100336388F032263AGGMKEVYEKARPKKLGKPKALSPNQKAAAKRFAKSTGTKYPSLLANMRGAQAKK*
Ga0068876_100336389F006545N/AMKLKDAAKRFESYDRATTKKMAEHNRSGGDVRAPVRSLKGASTGDKYDRAKFIYRKAAQALSAGHPLKDEKGRATPAALQFKRWAAKVPQNQADLQDLKSLGTRLKERYKPK*
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