NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10059649

Scaffold Ga0068876_10059649


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10059649 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2314
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002037Metagenome / Metatranscriptome600Y
F003066Metagenome / Metatranscriptome509Y
F011384Metagenome / Metatranscriptome291Y
F019123Metagenome / Metatranscriptome231Y
F030690Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0068876_100596492F030690AGGAMERSEVEIICNHMLGRTIVSCEALHGDSTIVIELDDDSIIEISGEELSLYGELTPRDD*
Ga0068876_100596493F002037AGGMSKIYWLFGLVMVALAIFGTEKAFSQTTTILAPDGSVTVCQVGSNGIIICV*
Ga0068876_100596495F011384GGAGMYTKLDDQRQAKFIIKYMDEHPGCSIKEIVQQCVTNRTRLKYLESQGYFSLPKWTYSKELDKRFKNRNYISVTVGREYGKWTGY*
Ga0068876_100596496F019123GGAGGMVDSKPLTQEEIIKAYKEAFGNGNAVLTLDRIFRFARLIEKAHGVKDVH*
Ga0068876_100596497F003066N/AMVWKKEENPHRKDGVLLMAKKEPVAWLYEEYDVKSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLFPGEPVEEYKGLSKYDSKRLTEAHGGL*
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