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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005527 Open in IMG/M |
| Scaffold ID | Ga0068876_10061579 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2273 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio, Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000258 | Metagenome / Metatranscriptome | 1443 | Y |
| F001900 | Metagenome / Metatranscriptome | 620 | Y |
| F028174 | Metagenome / Metatranscriptome | 192 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068876_100615791 | F028174 | N/A | KGVISNSATTRSSDKQIFSNKYLNDQIIQVRTAEKLTAREKVTNIRDVEGNTIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ* |
| Ga0068876_100615792 | F001900 | GGA | MLVQAASGLERMMYANQNGPLKDSTVAQVSAFVYYEAAVISKLTTNAQFKSAFTKIVFDQIDTDFGNYIDALARSKPKSLHHMYEWKRTGNKAARLFKLNKISEDGLSFRINYSILPSKSMVPSSNSKRRHVFVNKATVMEQGNPLVIRPKNAERLVFEYNGEIVYMPKGKSVTVKRPGGSAARNQFGLAHSRFFSGRLVNESIKRSGFQKIFNSSMTKALSVPSDIKRVQYSFSPNTIRSQADAALAASFGGAM* |
| Ga0068876_100615793 | F000258 | GGAGG | VTANYKLDAMLELRKYLWQELYTRNIFDEEEYWSDNLNENIVPIIPVQQAAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTIYSTSVSDINEIRNYMVDEFRRMDESARDINKWANLSDKFKFHTIWVADISPTAPSEELQGFFSAEVILEIKYSRITDGQGRFL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |