NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068872_10000647

Scaffold Ga0068872_10000647


Overview

Basic Information
Taxon OID3300005528 Open in IMG/M
Scaffold IDGa0068872_10000647 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29520
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001229Metagenome / Metatranscriptome741Y
F006841Metagenome / Metatranscriptome363Y

Sequences

Protein IDFamilyRBSSequence
Ga0068872_1000064722F001229N/AMSSVINAVLSMKLDVYKQIDIQDANTGSIKKEWIYDKTLDCHAKGVISNSATTRTSDKQVFDNRYYNDQILQIRTKDRLTIREKITNIRDSRGECVWTEINFPTNSPTVFEVVGTTPITDPFGSVLGYNSSVRRSENQQIGI*
Ga0068872_1000064724F000258GGGGGMVNYRLDAMFEIRKYLWEKLRDANIFDPDDYYSDNLNETIVPILPIQQAPEMNQFLSGKKHIVYDKIGMSYENNWLICCEQILFTIYSTDILDIVEIRNFLTDEFRRMDDSARDVNRWDSLSDKFKFHSIFISDMSPTAPSEELQGFLAADVILEIKYSRITDRSGRFA*
Ga0068872_1000064726F006841AGGAGGLATTVYDVEEIELQNGAKVKLKPLSIKQLRKFMAAVQKTQESTDENATLSILIDACAVALETQLPDLVSDRDALEEALDVPTINRILEVCGGIKMDDPNLIAAAVLAGQN*
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