NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068872_10480094

Scaffold Ga0068872_10480094


Overview

Basic Information
Taxon OID3300005528 Open in IMG/M
Scaffold IDGa0068872_10480094 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)669
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093305Metagenome106N
F102504Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0068872_104800941F093305N/AMDKINIYINSKNRKENEYANKFTVKIPNNLLRLNRDEYFTLNVNGFYCYNSWFNCIDGFNNMFQIIIYDSNDNI
Ga0068872_104800942F102504N/ASNLSSINCYDTHGNGQTDPVIFTAQTHPSQQRLGTLANNAIFANTESSPVFYNPYPEILYNFPISSNFLNNRYFDFTFIMQFMPGDFIDLTDDQQYFDMFHISFIVYDLDEQELLLTSTQDVDFKKLGETLPRKINNVR*
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