NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070741_10000085

Scaffold Ga0070741_10000085


Overview

Basic Information
Taxon OID3300005529 Open in IMG/M
Scaffold IDGa0070741_10000085 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)345619
Total Scaffold Genes349 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)270 (77.36%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000151Metagenome / Metatranscriptome1897Y
F000228Metagenome / Metatranscriptome1519Y
F000612Metagenome / Metatranscriptome985Y
F001829Metagenome / Metatranscriptome629Y
F001950Metagenome / Metatranscriptome613Y
F006713Metagenome / Metatranscriptome366Y
F009350Metagenome / Metatranscriptome319Y
F053909Metagenome / Metatranscriptome140Y
F081185Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0070741_10000085146F001950GAGGMIRKIALIFSLLSVLARFSYAQEDASHGDHSAAAGSIFVHSKFGGQIFGFDIDQNGPEGVLSEALDQPDGSVLAAVETFDQATGKIVKVLTRTVTQGGDDFVTLGVVGASVGLIEREHVLSFLHVQRSFHTINPLSGNQFTRNWTPPVGTTHLIEPTSVSRTQGSPNVAVFAFDNSGNFIPWVFQSNVVANTFGPIVKIPDSLNFGSLVPPMAFDIVSNQAILGGGDGCFGCFPVIGLVDVVKGTFSEFTGTGFGFINGIAVDAADGIFVTTTEDDASVEFYSLATQSAFTVVLPGSGEQQFFSGADVEFDPINELFLIAQPNSSSAPSGSTIYVYDINGNLKETINGFSFSNTFNVVPVHIAIKPSNRAGFVDGPDSGVTEIQSFTY*
Ga0070741_10000085247F000228AGAAGGMSRSKEPEPQARLQMFLIPCSCGATFAVSEDHDSKGTQWSRYLICSNCGKRHDPKNRLLQVGYHREGYWKVDAC*
Ga0070741_10000085300F006713N/AMGKLLDNFAAVWNLALLLAAAGVLIWFLYWVLLRRLLRARKIAHARERRMLREAAEREAAGHS*
Ga0070741_10000085327F000612N/AMTNLPIIDQPRWPAMDAESTPGFLDFKLVFQVSDEVVKYEDPMRQYRFEGFKASAQLEATVRLPSIDFTFKTDPLEASKCDFAVMGTEVNGKYYERPKG*
Ga0070741_10000085328F053909AGGMPNVELSSIYHFKGKLARSNSFHGMGRDNKGNRLAWGTPTTDYSYMAGEYWAARQAHRAIFAHT*
Ga0070741_10000085332F000042AGGAMKNVKFVVKINRGPARTAEYVQRIDRTPIQMTTNRKRALMMGKFTAEDAVKSLQNSRCSPELVSVQVNASYSC*
Ga0070741_10000085339F081185GAGMKPVPKLLNDFIVNETEYQACKAWLEEANEATIRHPLGNRELEMQRQRIKSLVAEYEQNWRHSGDT*
Ga0070741_10000085346F001829GAGGMRKQYLHLLAYPCDRCAGPIVAGSLAVRENEISKETDIRQTGAICLSCGHRPNNASEPARLVHFSPVEWGSVSLIEASHLRTAYVEALSRAELR*
Ga0070741_1000008566F000151GGAGGMHELQDGTKAMRGTLLSNNDPHVHEVVKTAHEELRQLMRQRAEIMKRIGTLKQTISGLANLFGDAILGEDLLELVDRKTGGRQPGFTKACRMVLMEAGTALTVREVCERIQDRMPAVLLRHKDPVASVTTVLNRLVEYGEAQAVMRPNGRRAWQWVSEPEPMPPLNDNNRASAPQF*
Ga0070741_1000008583F009350AGGAGMKHSLAAVLIVASVTSISFAQDWYHDRDEQYRGEEWHHHVFSYVRHDLEHIWSARNASERENTRLERTKEELTKMQADLDQGRWDNGLLNDVIDSLRKSANDQRLSHRDRDVLNDDVNRLHDYQRNHKHWAH*
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