NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070741_10000139

Scaffold Ga0070741_10000139


Overview

Basic Information
Taxon OID3300005529 Open in IMG/M
Scaffold IDGa0070741_10000139 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)283598
Total Scaffold Genes296 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)223 (75.34%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001902Metagenome / Metatranscriptome620Y
F020615Metagenome / Metatranscriptome223N
F024578Metagenome / Metatranscriptome205Y
F034534Metagenome174N
F056974Metagenome137Y
F069462Metagenome124Y
F073898Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0070741_10000139109F069462GGAGGMKKLSVFVCLILAVAAPAEAAWLLWKHNFVTRRVEGAPRGLSPEGNVDRWELLNALDLRKECIAALRTEHKKSVEALTATYPGEPVSQSIVADGIGATISAGAEKGGKGKMTQLYYEYTFWCLPEGVDPKWTRPEPPAPVVVVPK*
Ga0070741_10000139187F034534AGGAGGMMLSKTSRYGFSSALFFTVALSILALPGAAWSSLRDEMRQFHDFLQDHPRVSADLRSNPNLVNNKKYLDKHDDLDRFLKRHPAVKREIVERPHRVFGNYYRDVPPGWARR*
Ga0070741_10000139271F056974N/AMLGLPRRKLFFLAALAAALSASGCVNRLAMYARDGEKLDGKWRFGREGGGVIQVSGAAGEVLVGTFNPVPRKVFLEGYQKTFGGGTIDADGPDFSAFGNPFNGLLGNSNVLVDAAQSESYNPESGKVQTVTGPLFYWTANLRGDKRTTMQCFLIGSSYTGRGLGRCKGGDKEYTVEF*
Ga0070741_100001393F073898AGGAMPGLTSYRQQLRSIGQSLEAQRIQIFELTCRGDRFVIKGEPEKENSLLAALRQWQQRRRSEGLSASLTFNSQDIEQLERQGRAQRKQANRLPDFYSLPNTLRTVGYYVELKESELLELQKRQLSVTLLLRNPHGHPEMEERSIASFYQLFLKLHDKRGKPLPG*
Ga0070741_1000013933F024578AGGAGMAKIRAVVVEGDREAGYRRVQILFGTNSFIEITEEGGRVLCLLGAHDGGVQLDGSEVKGQFAEIVHELMQRHPEIVWQEE*
Ga0070741_1000013949F020615AGGAGGMFVENYRQENTESIMVGGPSALSPIPYPKISDEDWRVWNLFLPIRSVNLEQSAVARARHGMMYSLYGVPYSVTDEMHKANRFFDRIEVWRKHEIEKDPIAVGVIGEERYMIARWGMEKLLPFEKIKRSVPLILAWQFVTSPVAAMASVAAIGLLIWSILM*
Ga0070741_1000013985F001902N/AVANLYYNERLIIAFASFNQSDKQWTAGAEITWKREGRRHSHTIGALPDRFKTGEDAERFVINLAKAWIDANP*
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