Scaffold Ga0070741_10000379

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070741_10000379

Scaffold Ga0070741_10000379

Overview

Basic Information
Taxon OID	3300005529 Open in IMG/M
Scaffold ID	Ga0070741_10000379 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	165557
Total Scaffold Genes	156 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	111 (71.15%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025367	Metagenome / Metatranscriptome	202	Y
F053983	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_10000379126	F053983	GGAGG	MVEKFVWLSLFMGLTAMSLCAAPQMSDEKATQTVTGCLEKGTENHGFYIISKEGKHWELYPNSDVSLADHVGHTVTVTGTVAHRSAAQEEKSQPHEKKETGSREHADLQVSSMKHVSETCGK*
Ga0070741_1000037967	F025367	AGGAG	MKTKMSSLMLCLVLGLLSACVAFAQEQTSDQSKSDVRTITGCVSKGDSADEFLLTGEDGSTWEVRSSAVSLVNHVGHKVTATGVVSNPTMHNLKEDAKDAAHDAHMKKSETEHGHMKITDVQMVSESCK*

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