NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070741_10000485

Scaffold Ga0070741_10000485


Overview

Basic Information
Taxon OID3300005529 Open in IMG/M
Scaffold IDGa0070741_10000485 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)145047
Total Scaffold Genes126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)82 (65.08%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007132Metagenome / Metatranscriptome357Y
F011178Metagenome / Metatranscriptome294Y
F021852Metagenome / Metatranscriptome217Y
F064021Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0070741_10000485102F011178AGGAGMQVDVRDRGPELRERLRDRLDRAAQLRCDEHGEAVVAVTIHARENGWFDATWTTCCLELERLAVSIVRDRC*
Ga0070741_1000048531F021852AGGMTDFEDRVRRMAREAMGEIGRDASEIADVIEPPGADYAVITFVNDDVKPIEIAKPLGAGESQELDEIRRALQYRFGT*
Ga0070741_1000048592F007132GGAGGMRQAIRATAGKLNRSEELLDDEKEQAAAMLIANPGFGNPHVVRCSWCHETRTLFRDEDDAPFKRTARGWFCERCEVHAESQEVQF*
Ga0070741_1000048594F064021AGGMRWTILAVSTAIAALAGCTSAMNSALPPGRMNEAGSIRPCHRDHRDAQACGNAIFNQGVIAQIHTGQTLNDVRAIMRHDAERRTVDGANESWGYITNYNDKQMTWIAFTDSRVSSVTLQPWVRD*
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