NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070741_10002222

Scaffold Ga0070741_10002222


Overview

Basic Information
Taxon OID3300005529 Open in IMG/M
Scaffold IDGa0070741_10002222 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53522
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (83.02%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013999Metagenome / Metatranscriptome266Y
F017625Metagenome / Metatranscriptome239Y
F018762Metagenome233Y
F055628Metagenome / Metatranscriptome138Y
F066643Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0070741_1000222211F017625N/AMSRNKRREISEGEFLGLAKSHLSEDFPNPERIGCPADSDLTRMAEHPIEARDAKVSKHLMRCSPCFKRYQEILASLRQQSS*
Ga0070741_1000222214F055628GGAGMRDKRLLFLFGCVVLLIAIGCNSRANVSGIWKGSIEASEKGGKNKWQGPAELTLNQNGDAVTGTLVFTHPQGGRVQVPIASGVVSKDTVTFSGQNQFPMGSLELTFHGTVAGTSITGTADMTSRSMLIGPVVNTASISLAKQ*
Ga0070741_100022224F018762AGGAGMRQLRRTVALAGMVLAITLIVPVAAHAIFGTMPVIDWTAVARIGEQIGVSRDTLNTLGLYVQQYNQINAGVQDGVALARGRQLRGLMNQVVGSEFPEFQELQRDFRNVLIDPSTIRQDLENSYGVTKGDFPVSRKKRIDAADATATLGLFDASRMELVSEQEELDANEIEQRAAAASPGGAAKLSAAANGALLRSQAYNQRLLARLMRLQALSIARENSLEKEQEQTRQDQVTAVSNMIGSMKLSYGIGDRAGR*
Ga0070741_100022227F013999AGGAGGMSRILTGARRLASCALALLTSTLLLVMPAFAQVGGDRVSGFLSNSLSYAQGLGIFAAGFLVIWAVANVARERPSGKQWAGAGGSLLLSSLLQLLRTFAG*
Ga0070741_100022228F066643GGAGMPNKENNCKCVVCQVERSLLDSLSTQIARTHFQALAANHPVLNHYDSPTDVIARLHQHERVETDNHNAWNGILHALVQGLADRTTEDIGQQLLLVAYTPAIHKAYREICQRFPSLCPEDIAQQAAVCFLEAARSPEMHRMNGQLPLALVNRFRQSLFRWAMGEMRQALPDEEIPADVPEPQSTNFEGGVLLEHFLSKARTLGILSASECELIRKFHCEGFQPEELREGKDSPSGIALYYRVQRAVHRLRRIGAGGSIKASKTTPPTDTTHSQSKKVLGRRSNFPGSCAFRNSEKGFSPELSDVPQTEPDISQVPA*
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