NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070679_100867204

Scaffold Ga0070679_100867204


Overview

Basic Information
Taxon OID3300005530 Open in IMG/M
Scaffold IDGa0070679_100867204 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)846
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000415Metagenome / Metatranscriptome1168Y
F010453Metagenome / Metatranscriptome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0070679_1008672041F000415GGGGGMNESNAELAAALMEFNGEAVLYCDGISDTAANQYATGYARMLHNRARGLDSSPPPIPHGLFEPNRNLIRSTLERMSRKY
Ga0070679_1008672043F010453AGGMRIPRWSNVDTRWYLGVHCRKCGAPILFALDHSEGEVRPTAPGKLLLTCVSSECRHQADYSTATISRFQKEPVALTALGKMKVDNESK*

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