Basic Information | |
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Taxon OID | 3300005531 Open in IMG/M |
Scaffold ID | Ga0070738_10000268 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 160415 |
Total Scaffold Genes | 171 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 117 (68.42%) |
Novel Protein Genes | 11 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 11 (100.00%) |
Associated Families | 11 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000188 | Metagenome / Metatranscriptome | 1692 | Y |
F000512 | Metagenome / Metatranscriptome | 1064 | Y |
F000775 | Metagenome / Metatranscriptome | 896 | Y |
F000885 | Metagenome / Metatranscriptome | 849 | Y |
F002518 | Metagenome / Metatranscriptome | 552 | Y |
F006229 | Metagenome / Metatranscriptome | 378 | Y |
F007488 | Metagenome / Metatranscriptome | 350 | Y |
F009917 | Metagenome | 311 | Y |
F015120 | Metagenome / Metatranscriptome | 257 | Y |
F017859 | Metagenome / Metatranscriptome | 238 | Y |
F084509 | Metagenome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070738_1000026811 | F017859 | AGGAG | MNRGQMERPVEDRSVAELALQELQDRIEASCLESRYAGMVCDLCIGQVSLEQAFQEIHQKAMEQLVGLLDARVLDDEAALDACLEKIAEESERLAWAALERGTEALREGLAMLEKGQAVLDSGFVN* |
Ga0070738_10000268122 | F009917 | GAGG | MGTSGWTYMVVVFSLGAQLVVFLRWIHRRMRDDEIQRVFVRDLALRHLPNIYRALNTIAERQGIEIEETPIVNYVDMGNGGRHR* |
Ga0070738_10000268125 | F007488 | GAG | MEIRAYEEKDLEALKAIHARQGFGYEFPDLGNPLFLTKLVLGREAGGKGIVGASLLRLTAEAYLLLEPEAGTPRERWQWLLGLHEATRREALARGLEDVHAWLPPAIAGKFGKRLTRLGWVRDDAWTPYCKRLV* |
Ga0070738_10000268127 | F084509 | GGAGG | MSSYGNAVPPSSVGFGESAAVIAPTDTIFPAPFKSAQVALAPNFSSGKIRAAVEIVWSAAPGSISVQLQTADTDIDAAYVQEGNAITTVNSGNVTRAEFPDVVAKFARIYIATLTNNVTATGKISS* |
Ga0070738_10000268129 | F006229 | GAGG | MNQQSDVVSLVNICPQKWPPRYRAYFGSLMVNSPEAGESYAVTPIRGCTSVMDLGDKRTMEIRLSAREIADDLAREINGDSGEGSFHGVFVAAGPEPSEAELAEARKKLEEFHARLVEAADLEWERSHNLMFITDLERRAARELRLEKPWLYDRKPMAECPACGERIKPGVAVCRTCRAILDREKAAKFGLGGREAKNDEPEHTPDKKPAKGK* |
Ga0070738_10000268135 | F000512 | AGGCGG | MIQVIRERHETPENVARRLCLAGGVNRYGEANYRVVWGWNRLGWIGGKFEDRDAAGNLLREVVELRWEPKYPQVNRWHVERWVPAEAYGSPRSWYAQTMERADGKSVAALGPYPERGEYEHCFTLQGPRGEFVQLTPTIVEHVARAIEWSRGQGRAKQRAGLYEREERQEKVYEQWAYDVMDDAAPAMHGMPFVTVR* |
Ga0070738_10000268141 | F015120 | GAG | MFAFVKKFFQTRYVGMLEGEVVRLRMENRALLNSLLGTAGVPPVEYAEPAKRVELPRMRRRSWQQIQLKNEIEAREEKKS* |
Ga0070738_10000268143 | F000885 | GGAGG | MSMNSLTNPKVVFIGEVAQIAGVASVVGGVVLSLRHWPAAVALLGGLAAYFVGKKLRGV* |
Ga0070738_10000268151 | F000188 | AGGAGG | MSVKPELAFDVCWEVYRGAREVMEAKRGVAALNLEMEMKYAWRPDLRPKMKDWVADFALAGQAALESPDCASRMVMFRLYYLGLAPYERARHFLGLSERGWVNWSEEIRKKCGAEILRRGMFPPRKYFGGME* |
Ga0070738_1000026880 | F002518 | GGA | MVSGEEKCPVTGKRKYDTEGEALATAAHQIATTQALQALRAYRCTWCEAWHLTKKPYKPGKMPR* |
Ga0070738_1000026899 | F000775 | GGAGG | MKNLDSVFAAYLIGWGVFFLFYLTVARRTSAVRAELERLKNQLPKAK* |
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