Basic Information | |
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Taxon OID | 3300005531 Open in IMG/M |
Scaffold ID | Ga0070738_10001020 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 65836 |
Total Scaffold Genes | 66 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 57 (86.36%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F014323 | Metagenome / Metatranscriptome | 264 | Y |
F031154 | Metagenome / Metatranscriptome | 183 | Y |
F037299 | Metagenome | 168 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070738_1000102023 | F037299 | AGGAG | MNDRNQQIRVLIDRLSSSARVAQALSLDDTSRLLAMALLDLQTKLHAISADELRHFTRTVANVVEFKVRAPANDAAHVESGESMQNGHTPFLG* |
Ga0070738_1000102056 | F014323 | GGAG | MSTKRSRVPELQRQLLMAGIKHHNGRLRLSKGSAETLAATYAALLSLQRKKLIEPEKPADPSMMTWKVTKAGKAAVAEKHSRR* |
Ga0070738_1000102057 | F031154 | GAGG | MNECLNGADAASRCAFCGKHLPIVNGELRPWRAPNGEFFCNEFCADDAEEVRFRRHGRAERKAHQRDFFF* |
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