Scaffold Ga0070734

Basic Information
Taxon OID	3300005533 Open in IMG/M
Scaffold ID	Ga0070734_10000066 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	296604
Total Scaffold Genes	237 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	147 (62.03%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

296604

Total Scaffold Genes

237 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

147 (62.03%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000269	Metagenome / Metatranscriptome	1410	Y
F000323	Metagenome / Metatranscriptome	1300	Y
F002201	Metagenome / Metatranscriptome	584	Y
F009971	Metagenome / Metatranscriptome	310	Y
F024621	Metagenome / Metatranscriptome	205	Y
F032558	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_10000066193	F000269	GGAG	MRTLSRLAPLLAIFLLPSLLVASDQSTSRPTDVPATVIAHLNLPQATGAQMLLQQESSKRYLYVQQAGKTGFMIVDVSRPEKPTLVKRSAESNQATSGNLEMVAPNVAIAEAPEKTASTLTNSNHPTETVRVLDLSDPRNPKTLETFNKVTSMLPDGNHGLIYLTNDEGLWILRYNRPSLLEPAKKKPPCDSNSEIMAMPPDCD*
Ga0070734_10000066194	F000323	AGGAG	MKTICVLLLISGSFLFAQDSTKDSKGQVTVQGCVGRQNGDYVLTKQHPAITYELQATGKTRLKNYLGQRVEVTGNEGPTMSSSSDALNKTGSAAPTTITIRSIKTVAKDCETMSGQ*
Ga0070734_1000006626	F009971	AGGAG	MRRFILGLLLLTVPMVSALAQTPALQMNVVYVCTDGQSFKVFSCSSATGACDYQNYKNGKAYQRGEALRVQLAALLPSKCHAQTPAEAQKDPHTGEIAPAPSPFKARAATASTGAASATPTNAPSGPGPGGFKVGDTVRVLIDGWQEAKIIEVHGNSYLVHLPNGINVSKMWPWEVHRLGKLTAEDHAAGQYDLHDRVQVLVNGKWMEGEIRGQNNVNMYDIKVPGVDTGFGSDIVNTTANNIRMSTTAAPAPAQRAAGQVPKAGLASCAGRYEGRWEHVSGMGGMTVIFRSGKATIREGLGGDMLFDCFTGEGKVVFYKAGSFTPFSYDFDVNSDGTLQTPLGAIKKMGN*
Ga0070734_100000663	F024621	GGA	MARSEHRSEQQIQAGRTPLGLWWSLIAGFAAWAFDLGCSYVLEQHSCSTGHYYVLHITSVVCFVIALTGFGTGWMEFKRFPGTTSEEGGSHFDRAHFQALLGMALCLSFAVVIIAGAVPRWILSPCE*
Ga0070734_1000006684	F002201	N/A	VSNRLELEVRRETTRMWIHDVAPERLAELFHHYLHALLPDLEGKAAAPKRGDWTAVPAKEKSRLVAAARLALLELESGTSEQGESRRYFARPGEAEWGC*
Ga0070734_1000006696	F032558	GAG	MSDEKTSRTNLSQMDKKPVARALSGVQCLRCKHEIETYVFTKLTFLPYGSQGGNVMLECPKCGHLEFLSQNSPLLQRLKANPVAVGDGD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070734_10000066

Overview

Ecosystem & Geography

Associated Families

Sequences