NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070734_10000132

Scaffold Ga0070734_10000132


Overview

Basic Information
Taxon OID3300005533 Open in IMG/M
Scaffold IDGa0070734_10000132 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)208033
Total Scaffold Genes179 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)135 (75.42%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F001589Metagenome / Metatranscriptome667Y
F005269Metagenome / Metatranscriptome406Y
F018587Metagenome / Metatranscriptome234Y
F022474Metagenome / Metatranscriptome214Y
F029822Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0070734_1000013211F018587GGAGMATVSRPLIARARSLRAFIAASLRKMLRMERHDGDFASQRVCPFCGRITPRYETCCLECGKALKAA*
Ga0070734_10000132135F022474AGGAGGVKTTLFAAALVVAFSLSAMAAQKASPSKHLAGNMNYNDGTAIQVPPPLCDPCLFYGGDLNTSDPNAAGLSDENSLFIPGSSTYGNVVIPSGMSVTVTGILFNVQADANFDPATASYDIRQGVSEGNGGTEIATGSGSIQIQATGRNFIGLNEYSIAVNLSAPVVLGAGSYWFNMTPNCTNGATDGSCYVGRFFVSNVTGRTNSIHGAAEPGHEIFFNSSFFGFTWANWCDSSLGLNGKQCNGLSFGVLGSQNF*
Ga0070734_10000132136F029822AGGAGGVKTTLVAFALVVALSLSAVAGTTQSPSAHRAGSNNPDKAAPPTVNPPALCNPCLFYGGDLNPSSSNAAGMSDENTLLIVGGGSTYGAVNIPSTANVYGIVFNVQADAAFDPLNATYDIRTGVSEGNGGTSLASGTGTIVVQPTGRNFLGLYEYSIAVSWQQPVTLNPGEYWFNATPQCLNTLDGSCYVFRQFVSNTTSQANGVHAGWQPAHEMFLNSSFFGFSWANWCDSSLGFNQYQCGFLSFGLRGKD*
Ga0070734_1000013218F000042AGGAGMRNIKFVVRVSRSSDRAPSYVRRMSPTPVQMTTNRKLALMMGRLTAEDAVKCLQTSQRIPELVPVSVLAWRGLEI*
Ga0070734_100001323F005269GGALTISDSNASYAIICYNIRTYRSAGVIAVIRGKHQAELELKKFEDAQDSSDRHEGWRYLIDKTDLEAGTDPAEATLHRQAELEKRESKALQQIDTSNFPSPHRQR*
Ga0070734_1000013247F001589N/AMRTQIIVIIALCATCCSCSPRDILTRRLARDLIAMSPTFRAPQQFQLRTGVIGNSEYLSPQYLALQHHGWISAASVRCPATIPPPCWDVTLTPGGVETIQAFVQPGDADKPVFSIPAARRELIAITGIAKQAGAADVEFTWRWVALNEIGAVLYSSGSQYHATVALRDYDDGWRLVQGAPQTNQSLDEALKNSTPAQ*
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