Basic Information | |
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Taxon OID | 3300005533 Open in IMG/M |
Scaffold ID | Ga0070734_10000865 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 51912 |
Total Scaffold Genes | 49 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (75.51%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000612 | Metagenome / Metatranscriptome | 985 | Y |
F014776 | Metagenome / Metatranscriptome | 260 | Y |
F024432 | Metagenome / Metatranscriptome | 206 | Y |
F026728 | Metagenome / Metatranscriptome | 197 | Y |
F031990 | Metagenome / Metatranscriptome | 181 | Y |
F038885 | Metagenome / Metatranscriptome | 165 | Y |
F099764 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070734_1000086510 | F014776 | GGAGG | MKVTLNPECAVRKLSDCEDGNDQGPGLKLDRRHLIKMGAASVFATLLPIRPLQAQSEPQSCAPAIPQNHAPSNGGSCPYPIPWLDKNGNHNQSPMPNVELSNIYHFKGKLARCNGFHGMGTDNKGNRLAWGNPTTDYSYMAGEYWAARQTHQAIFAHT* |
Ga0070734_1000086511 | F000612 | AGG | VTPVPDTGLTFTADNKIATLQMTNVPIIDQPRWPAMDAETTPAFMDFKLVFKATDQPVKYEDAARQYRFEGFKATAQLEAAFRVPSIDFSFKTDPLETSSCDFAVMGSGVNGKYYEAVKSS* |
Ga0070734_1000086512 | F031990 | N/A | MSTIKRYLRWAVLGLIFVLTASVNLFCVVIDNDDDGDPTTGLTIEFTAVQGKRIQIASPVHLKSTLALKVFRARFFHKQRVERSNELNTNSSFSNLIDLLGPPLRC* |
Ga0070734_1000086513 | F099764 | GGAG | MGRAKRNRQLSSKELMQLTIWGGLLFMILLGLVYGLVRAGAVIPVGSGVERHAATASHGNTADSHP* |
Ga0070734_1000086515 | F026728 | GAG | MTHRRSALRATIVTTMNSLLIKCFRCAVLAMMLLLSGLASMVCFSYDADGDESTPPVTIEFNGVVPSKKSIQIPKPHSTAAAQHVSNEQPASIELLVASNDSSSTPLRDKESPQLLVPLRR* |
Ga0070734_1000086530 | F038885 | AGGA | LVAAKQAPEPPNTRLSVGDYIADILLDARPNGTLYHWIVQRVGSAAIIQWGQEYTFEDAYSAVSSYLENLANPQQEKA* |
Ga0070734_1000086540 | F024432 | N/A | MKPLLTRYLRGAVLGMMLLLSGMAGMVCFSYDADGDDSTPPVTVEFNGVVPSKKGIQVSSPRSNTVAQHVGNVQSATIELLASVSYLSIPAMDMDKGSPQLVVPLRR* |
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