NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070735_10004346

Scaffold Ga0070735_10004346


Overview

Basic Information
Taxon OID3300005534 Open in IMG/M
Scaffold IDGa0070735_10004346 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12004
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008143Metagenome / Metatranscriptome338Y
F051804Metagenome / Metatranscriptome143Y
F069867Metagenome123Y
F102903Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0070735_100043461F008143GAGGMKSVGGIHRTRLAASKVHRHLVKEARRTVQKLGWQVPEGDMSPTLVGAIPLPFPVPESFETAFGYKGNLRFVQFGYTAGSPQFGYSDGGDDLPSDGSLWSWFLHHPAVAPYLPESRYPTLYGKFPSGTERPPLEQIMRGGAELPTCHCLLLDRRDRRTYVSERDQAMILFALMEPDDGDAHNVYVDGMLMSPGSEDYKVAQPPGVLDEFRRFMDSRVQAFEGA*
Ga0070735_1000434610F051804GGTGGMTKPVVCTTLMIEIYGPRDASSKRIRFVEDILRNCIKTLDKDFRKSRFPQMKGFSLKPEKDLRKRRKR*
Ga0070735_100043467F102903GAGMPKPWIELKEARGRTIKKMNVVYDEEYVAVEVEFEDGHSMNVDIVPAVQIRPQFQHVSTGDTRILRNYRSRISVAGGLKINLRSEADLG*
Ga0070735_100043469F069867GGAGGMPQRIHEYPEVIGKTVAKVTVTNESDWHNISVKFTDNTAIHFTIRSFMHFEPEHIDWTTGNGKILRSYPFVREREG*
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