Scaffold Ga0070697_100008194

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070697_100008194

Scaffold Ga0070697_100008194

Overview

Basic Information
Taxon OID	3300005536 Open in IMG/M
Scaffold ID	Ga0070697_100008194 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8157
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012009	Metagenome / Metatranscriptome	284	Y
F027149	Metagenome / Metatranscriptome	195	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070697_10000819410	F027149	AGGA	VYAKLIFANPKLLFSLSEATLLPGNTVECAWCKDPKPIGETTWFMPEPGERSVRLCGFCYEEARKQVRLLRSVRIRGEFPVEAAS*
Ga0070697_1000081945	F012009	N/A	MMVEAGVIGFLAYWIVSEYFFNAYFHDYVDQLFGAHGTTLTAALSLGIGLAGSAIAAALYRNLQHAKSRLETIGAPRIRGAVEKILSSLPTVEELQRVSVPKALPSSPVASSPPSQVTSPAPVSLEKEEQKLDAPKS*

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