NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070697_100022251

Scaffold Ga0070697_100022251


Overview

Basic Information
Taxon OID3300005536 Open in IMG/M
Scaffold IDGa0070697_100022251 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5031
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043519Metagenome / Metatranscriptome156Y
F057256Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0070697_1000222511F043519N/AFSGAEIRKQIIEDYGVDIGRFVSIQFNESPGGRPISVLVRGTSADVDLKGDRFLRTTLGLKSTLVHTTPF*
Ga0070697_1000222512F057256N/AMTNSARRGPVLALATALVFAACGAFGGSGANATLCPPAALESVTVDAKTTTPVTYAVLIDRAYTGDSKRSPSYPWPQLPRTALETVAAALPKLDLHPGDALVGAWISHNSNDTSEIFLPFSQVNRAPTPELPAAPTAPKLPVNKLECNEYAASVKTFNEAAKIWRAKVTELQQRATGEDQRNVTSFITATTEAIRGAAPAQDPVGTDIYGSLAVASGVFKANPGTHKLLLFSDMTDTIGNPVRPDLAQSDVVVALYHRDDASDQGKGQKDWEATFKTLGARAPVFLAWAATTADKLAEQLKGSAR*
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