NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070697_100368040

Scaffold Ga0070697_100368040


Overview

Basic Information
Taxon OID3300005536 Open in IMG/M
Scaffold IDGa0070697_100368040 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1243
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060005Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0070697_1003680401F060005N/AAVAPSEKATSAENVAARKTIRKAFMAVLPVDAYFAAMVGLADNRGRRPRAKPIEIRTFLDRHVRFTPANRDNVGMKRRELPSASIAATWERARSGDLRGAAEAARKALGELGPEATPGSHVELHLVAAFCAMRQGDHSEAMRELDAATHAASSPQVNGRLELRVETWRAELAYFQGRYSAATEIIDRVLPPLEQSGDWAYAAFALRIRIAILLARADYAGIAAQADRAVRDAEKSGDDYVMVQVLNVLGAFHFDCATSKLPEPHARGHLSSLDPRDAAPMEADAREALGFFQRARAVAERAHYEFAAWYVAGNIERLEILLGHADRAVRAIRKRLKILQARGAKYDEIVTRSNLAWGLRTLGHHREALHELDVAFNLARETHTSNVLLEFLEYDRSIVLAALGDITGAQASYR
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