Scaffold Ga0070730

Basic Information
Taxon OID	3300005537 Open in IMG/M
Scaffold ID	Ga0070730_10000063 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	132083
Total Scaffold Genes	132 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	105 (79.55%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

132083

Total Scaffold Genes

132 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

105 (79.55%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016196	Metagenome / Metatranscriptome	249	Y
F059161	Metagenome / Metatranscriptome	134	Y
F084158	Metagenome	112	Y
F093393	Metagenome	106	Y
F099197	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070730_10000063114	F084158	GGA	MPNRARTKRPIRFRNHGDSPLAPAMPVNRELLLKLAQELQQMTIESMEGLGVSRKEQMVTYRRASKGVGSKDRPSTRLMDRISAIADLLSSWRRDRRYIQPDGSPRVLPIHGKGASLETLAKKFVPEMPVNEVLTAITRHGEATAYQGDKVALVGGSVLVTPKTAEMALALLVNRIGRVSKTLLHNVSLPEGNKGQGRFERHVFGVLSEREFNEYARVMRTQLQDLCDRAESGLELAADKKGRKRKACGIGIFVFRDD*
Ga0070730_10000063116	F099197	GGA	MAKGRPTSTRRPRRASSLLGPPADRELLLRLVVEMNHIAQDVFLKLGVSPEEQRVATLRARKMKTRLRPSARLMAAIHGAGDVLSTWRRDRRYLGSDGSPRVLPIRGRGATLETLVRKCVPQMTLEEVLTYICSHGEATLYKRDRVALLGSAAVLTQRTPEITLAWMLTQFRHVADTTLRNAVIPAHQVKGVGLFQRQVAGWLSEKNFRLYAKEVFPQLQELCAQLEAGLSIDRRAKPRANRKECGVGLFVYQDSGNIG*
Ga0070730_10000063122	F059161	AGGA	VSASAATGALALMIRACALVLFMVMSMAEPFLAVVLSALAIGCFFVAVLFGFIFHAPFPHRWFVLVASVVFLLVYVLYRFVMQGVQRLLR*
Ga0070730_1000006325	F016196	GGAG	MTDVYVYRFMRRGPAGENILSERRATLETIKGKGEAVMESQIVVDHTEVDGNGFLIGSAGNESHPMVELWAEIRSLERRANSRDNEALTLGESTEGQRIYSLHLESRELRNQAQRLKKQRADAMASELGNRSDGQDFLDFVGSPTTG*
Ga0070730_1000006397	F093393	GGAG	VRPKKRNSIRESSATRNRSSPAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070730_10000063

Overview

Ecosystem & Geography

Associated Families

Sequences