NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070731_10000001

Scaffold Ga0070731_10000001


Overview

Basic Information
Taxon OID3300005538 Open in IMG/M
Scaffold IDGa0070731_10000001 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)690881
Total Scaffold Genes604 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)385 (63.74%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000378Metagenome / Metatranscriptome1211Y
F000530Metagenome / Metatranscriptome1047Y
F000725Metagenome / Metatranscriptome918Y
F000949Metagenome / Metatranscriptome823Y
F001632Metagenome / Metatranscriptome660Y
F064949Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0070731_10000001191F000725N/AMSSLRDSREDASSMTRVLKTLRVVQWSMLASILLYAALGQALLGREGRAVDPAVSYLFSTLAVAIVGIIFVVRRTLVMRAAESLATHPDDGLSLNHWRTGYLATYALCEALALFGLVLRFLGCTFQQSALFYIGGFVLLFFFGPRQPVSAESAPGA*
Ga0070731_10000001198F000949N/AMNRSSSDAPFYLLAALCGVGAGWADVAINDLLFTALLMVAACMMLGILRPRWPWRWVVTVGIFVPLTELAAYLVLTVKPTRAQIYGSFLAFLPGIAGAYGGSVMRGVIENLRQGK*
Ga0070731_10000001201F001632AGGAGMFLNSWKFILASTLLAIVPGLATNLFAADVKEQLAYCSYVMEQAQAQRDLLRTPVGALGMTQPETGLPLQVVAGASLGLADLRKSGLTMEAARRNCELYKATTGAQQDIQYAVPSLEREALRNRLALIEQASKALDSMMDTTAKMVEAQNATRLMLFSLQTTRIKLDADRADTQAKITALYVPELNEKPLKELVAEKQNNEVSEQKALDRLNRQNNWDVALSVGVHQQVNPVAQGAQPYGAVSVNYNFASRAINRHLDRAVDAYGEWKKAQEGDVVRNMEVLRQQLTDSVTAQEARLKSLQAEIGEIDKNLQVVGSPDTSAAFDFHNQLSAAELLLQIESGDTGFRIERLREFLAKNY*
Ga0070731_10000001335F000378GGAGGMEDRAPVVSSTEQSSTTAAIRHHEGRGAWVLTCYGICGLALFGVLAYFFSDFIAH*
Ga0070731_10000001363F000530N/AMSDQVESAAPAVPVNENKVAERPFRVKLRGSVLVLVRLPNRRDVRAAIHQLSTTGGVIHFEKPLDEKIIVELIFHIGTSTIREKAQMLFPMWATQGWMQPFRFMDVSDAGRELLDTSLKSFLGEAKGAAAGK*
Ga0070731_10000001527F064949N/AMLLFESLSAGIMAVAVGFGAVLIVVGVYVIIVWPLTFWDLANLGLEKYSSLTNVVLWSVFAGGTMAGYWCFSGAAFKSKPKAQIPARPVRARR*
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