NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070731_10000006

Scaffold Ga0070731_10000006


Overview

Basic Information
Taxon OID3300005538 Open in IMG/M
Scaffold IDGa0070731_10000006 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)540323
Total Scaffold Genes479 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)325 (67.85%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000508Metagenome / Metatranscriptome1069Y
F000822Metagenome / Metatranscriptome876Y
F000969Metagenome / Metatranscriptome818Y
F001431Metagenome / Metatranscriptome696Y
F002981Metagenome / Metatranscriptome516Y
F003708Metagenome / Metatranscriptome473Y
F011701Metagenome / Metatranscriptome288Y
F020062Metagenome / Metatranscriptome226Y
F048481Metagenome / Metatranscriptome148Y
F089720Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0070731_10000006114F001431AGGMWSIQDVSPEELAMLFHHYQGALAHGCDEGEECRAAWERTPQGERKRLVAAARLALLELAAAATHRDAERPYFAKPGEAEWGC*
Ga0070731_10000006123F011701AGGAGGMRSLRLSRAWLFCALLTSLLLVTVGASAKNGRYFTGYYNLSGVQEQGDLIQVTLHLRLFNHSNSDLSSVVVTLLDSAPALNFRGNYEPVKVWKKQQFIEMSQEFTVPKLEFQQWTQAPAQPNLVILFQDSTGKTWQEGAQLSRREIAK*
Ga0070731_1000000617F000822GGAGGMQRILKLCAATILAAAGAAHGQEAKVFHGEVSDSQCALNVHSLTRSHQEMLKSKSMGGTANTCAVYCVEHMGGYLVLSAGKDVFRLDRADLVHGFEGQRVKITGTLDTKLNLIHVLKIDLDEKE*
Ga0070731_10000006265F000508AGGGGGMTNLNKVVTSLQNEYARLEKEMGRVGKALDALGHAGGKKLKKTGRILSKEARKRIADAQRLRWAKVRKQAAKLVKP*
Ga0070731_10000006300F003708AGGAMKISTILIVIAVLLSFAVLSLHTRATPLGAASQADSNAPGFMQTLIEPASSVGPLKLGDSEEHALELFPKKDEDQRWEDSCGTTLDWIDATNPTGRGDLFIRLKKDKVFQIESATTRFHTAEGITTFDPPEKVARVYKDLRAYTLLTPPLSSLGDRPLVFWIDKKKGIAFTFAYYPDQHKRYLYKITVFGSNKTFCPEQETMNSPKWQSIPSYSLEPPPEMAPNRE*
Ga0070731_10000006338F048481N/AMGLPPEGALNMAAWDMIRDLVSSEPSLNEAAWESLRGVIGLLGSGEEPESTGRYRRAG*
Ga0070731_10000006417F000969GAGGMINDDVVKCPLCGGFTHIEKADLRDALSNPRLREQVERYITELLKSPVEELSFVGATQAGRDFQKDVHSWNPCVPMWRRSPKE*
Ga0070731_10000006421F089720GAGGVITPQDGLPTAEVCSQIKQFGYAMSQKIRIYGEEFEVLSDPFASDGGIAIHVRSKRTSQTRVLQLPATIVHRVRQDMTRIA*
Ga0070731_10000006422F020062GGCGGVRWKEYEPLRDLPIAQEPRAYSIHVIQTVQARPGKRSQRLQLAEAIPIVLRRQDGHRVPGKLRCVSLTGGLIVPASLLPPGSMVNVIFVTPKGPVTGTAEMLRPVSWTEQPFRFAALPDSGQHRLRAVIDMVYAPTEIF*
Ga0070731_10000006436F002981N/AVPAGPTINIGEEYGTAKKNLPPAKIVLIAVAAVIVVVIFASFLKRAKPQASGSLDNVAAAEIPGQNSTMVALTFTLHNTSDKILYVHNIQASVKAPDGDATADAVPAVDFDRYFQAFPALKVGAQPAIPPETKIQPGETVSSSVIVVFPKTLDAFNHRQSVSVIIWPYDQQLPVTMTK*
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