Basic Information | |
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Taxon OID | 3300005538 Open in IMG/M |
Scaffold ID | Ga0070731_10000059 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 213501 |
Total Scaffold Genes | 224 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 148 (66.07%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000078 | Metagenome / Metatranscriptome | 2550 | Y |
F000175 | Metagenome / Metatranscriptome | 1756 | Y |
F000548 | Metagenome / Metatranscriptome | 1036 | Y |
F003701 | Metagenome / Metatranscriptome | 473 | Y |
F057528 | Metagenome / Metatranscriptome | 136 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070731_10000059151 | F057528 | GGAG | MRLSLSGGSAVLSKGPITPGTMGNITMMTVFGKVSAQVEFLHTGADGVPLAQAFRFLTMEDESLQRFTAAAKQMEEEGFSDAVPHPSGLSAPASETLGLLLHSVRRLAATLVASKS* |
Ga0070731_10000059192 | F000548 | N/A | MPNESSTGPRWIGIPVRVCAMTFLFTLLSFAVALLLGILGTVVYSQVKHVAPNMTFAYRHVAFPFAITAGAIVMVLSIAMEIRNYRQRKTLAGIERVS* |
Ga0070731_10000059209 | F000078 | GAGG | LDNLYCLRCNRELEAGQKSVAVFLFAQTVGVRPRQKSSAQRICFCPQCSVSLAMGPAPEGALNLAAWQMIRDIVGADPALTEAAWENLHGIEEGLLPATGTNGRLPGRAGSYLDF* |
Ga0070731_1000005956 | F003701 | GAG | MRESTLPSTSGRIGARTKGMKNVCLLFRLALFCVLSFCLLLAGCAEKKKPVAPTPPAIRSQLPPASAEIVEHCVVVKQENANTVTCSCQLVTTVIDSRTGHTKLVCKRMKEEK* |
Ga0070731_1000005963 | F000175 | N/A | VDENRKGFLLIAATILAARKLSQYEAGARIPATIIAITDAVMWAEKILSVIDDRWPPK* |
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