Basic Information | |
---|---|
Taxon OID | 3300005538 Open in IMG/M |
Scaffold ID | Ga0070731_10000098 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 165647 |
Total Scaffold Genes | 143 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 99 (69.23%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000131 | Metagenome / Metatranscriptome | 1986 | Y |
F009619 | Metagenome / Metatranscriptome | 315 | Y |
F013438 | Metagenome / Metatranscriptome | 271 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070731_10000098133 | F013438 | N/A | MAVPAGKHLQFEFLRFAFSDRGATRTVRTEVTVERQGMALLIGGAAAGLENCPLCGQKLAPGQAEETRLRLEEGLSTKNDLPADGTSS* |
Ga0070731_1000009866 | F000131 | N/A | MGLAIAAMGLPLCAQISLQALVTPSTIISTKDGQPLKFAVHGFIEFNSLSELFPYIDSQTERWNVYGGFNDEQRQQLASDLLRRGIESRVVSMLDERPLETLTTHTSDELRQALSQVEERVPPGYADAFLAVQEKWKHSLNCWSASPSIPARVLSNWYPIEEGIDLFGATYDSTEHFWQAMKYHPDLTIADLTDLLVTLEQKNWGPWLARLDADPKIYLPNAYAVEFLRHNLIHERLQWFRAELGKHGLTASDHARAAQQRGRVPFRFSAYEEKVLWGDLADVFHLVYVFSPPDDPMRKVLAARHFDAVYLGERRMGFISEDFRSLMFEIWHVKYLKMPRFREVISSIPIEIRLSHFLDDGDSPDIPIPIYVEYSNQIRDLARKR* |
Ga0070731_1000009885 | F009619 | GGA | MGEFSILTNRKRALVALIHSVVFLLIASLQMIATRPAAGIWVSSRVSTGTWILCAILTIVSSILLWLFVVSRGWIEKFYFALCTVSATSGLLRTAAGDEAFHIGLYIRVAMLASAVMVGLVIVRLHSARLRAVKFEAEGASDS* |
⦗Top⦘ |