Scaffold Ga0070731_10000395

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070731_10000395

Scaffold Ga0070731_10000395

Overview

Basic Information
Taxon OID	3300005538 Open in IMG/M
Scaffold ID	Ga0070731_10000395 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	61112
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (54.39%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004564	Metagenome / Metatranscriptome	433	Y
F009829	Metagenome / Metatranscriptome	312	Y
F010121	Metagenome / Metatranscriptome	308	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070731_1000039514	F009829	AGGAGG	MYARIVEFVPRAEKKDEFIHVMKNEVLPILKKQVGFLDILPLFPEMKNEKVVHITLWMEKRDAERYEKEVFARVEDILRPLLNTPITWRLYQVETTLCEHFVNALAA*
Ga0070731_100003952	F010121	N/A	MAKSAIAYSLDSSYPEFREELTGFCEVSEEKKSRWLWPWGLLATGLAGAGVVILRGCWHSRMSWPVRAQGHSYQVCLGCGIKRLFDEEAFRAYGPYSYDLNRLISWDRVRQAKMSPAKEHRTAS*
Ga0070731_100003957	F004564	N/A	MELNLQPHPRSLKGTAGLVVAVAVVAVLLVAFPAYRWFFAISLGIGLGVAVALFLWHKLRPIREEDVENKRPLGLN*

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