NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068853_100009040

Scaffold Ga0068853_100009040


Overview

Basic Information
Taxon OID3300005539 Open in IMG/M
Scaffold IDGa0068853_100009040 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8023
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052754Metagenome142Y
F055252Metagenome139Y
F105965Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0068853_1000090402F052754GAGGMRFGFFFLICFCGLLLFAKDTPKAMLVSHNDIKGPIIGNAHVEDLELFADGRVRYSESGNDRKTGSFNTRLTPAELRRLTVLLNSKEMRAVPAEIPSKIKVVDFDWEAQLKIQHASGRQDIAIKNFYPLLNTQLPAAYPKALIELECMLRDLQARATKRPVHTEDEDWCPEKAH*
Ga0068853_1000090403F105965AGGAGMNQEFLEDLHQFELDDWGRYGKARQKWEKHLRDPDDVFIHAEERKKELARQRKKH*
Ga0068853_1000090405F055252GGAGGMISARTSLRVFSVVMLALVLSAFTAPASDFSGTYTLGAAAAAGKDVQFTIMLTVANNTSSSIGNATISLHEPQAGRVVYGQLAGLSLAAGKSTQVNGSFRVPQALYQSWQKGSSPAMSVTYSDAQGNPVQSFIQF*
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