Basic Information | |
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Taxon OID | 3300005541 Open in IMG/M |
Scaffold ID | Ga0070733_10000017 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 221594 |
Total Scaffold Genes | 209 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 130 (62.20%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000477 | Metagenome / Metatranscriptome | 1097 | Y |
F022698 | Metagenome / Metatranscriptome | 213 | Y |
F034304 | Metagenome / Metatranscriptome | 175 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070733_10000017156 | F034304 | AGGAG | MSGINGDKSRFNRERKQKIAKRNRNRELLKSLGAPKPVAPAGSRTKAVAE* |
Ga0070733_1000001734 | F000477 | GAGG | MPATPTKKFTPEIDAQLYDEFVAVAEQNGQTKRHVLEQALAFYLHNVVPSQHLVRPAVMDAFEQSVARNRDLLQRLAK* |
Ga0070733_100000177 | F022698 | N/A | MDHGQTTDKAAGASGGANRHVQDVIRRAEGELRQLIEERAEVTKRIGTVKQTIVGLANLFGDSILDAALLDLVDRKSGPRQPGITRACRKVLLEAGRPMSARDVCDEIQRSLPGLLARHKDPMATMNTILSRLVEYGEATVLPGDRGQRCWQWAAERQDRRGGAPDGEGSDG* |
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