NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070733_10000040

Scaffold Ga0070733_10000040


Overview

Basic Information
Taxon OID3300005541 Open in IMG/M
Scaffold IDGa0070733_10000040 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)144103
Total Scaffold Genes142 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)95 (66.90%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000238Metagenome / Metatranscriptome1494Y
F000348Metagenome / Metatranscriptome1250Y
F000414Metagenome / Metatranscriptome1169Y
F005062Metagenome / Metatranscriptome413Y

Sequences

Protein IDFamilyRBSSequence
Ga0070733_10000040122F000414AGGAGMSAPSRRPEIRRRRTRNEKIVHLRKRLAAAKTDADRDRITAKLHKLSVGSPGQPLLK*
Ga0070733_1000004042F005062N/AMGILDKVGFMKPNVARRVASICFLAACTLFSIESQPPSACAQAPAIRVQSSLVLVDVVSQDLKSGLSVRDFKKEDFHVFDNRHEVRIATFDAGADIRPITLWLVVICNEGGVVGGSAEFVGKESLFRSAMDHLEKHDTVGVAHWCDNGETQLDLLPTEDRDRPIGALAETLRPISFRGGTDASDQVGEETFREMIRLIIHDAYQRNPKPLPVIVFLHGDHTGQPRQELDKVIDDFLETSGIVFGIRDDQSAGLLFLIGEQAKILHYMAKHTGGQYFSAPPSGYAAALEVVLTQLHSRYELGFIPPAIDGKRHELKVELTKEAKAEHKRVRLRFRPEYIPVREEPEWAH*
Ga0070733_100000405F000238GGAMSPQRTIRSPRWYTIPIRVALVTFISTLLSFAVTLLFAILGTVITARLHGVHPDMRMAYRYIALPVAAVAGSIILVLALFMEIRHYRQSKTLAAIERLS*
Ga0070733_1000004074F000348AGAAGLLQSVRVRSLGSIPHLKKALFILIAVVLAPVVLVSVVAFAAGDWHPIGETGAGDRVSVSSLRVRKDQRTAWVRVEYKEPAELPQGGPFVEMRARVRFNCASGGVVPTAEWFYSRDHSGRFVVSKKATRDDQFGKVREGGFGEMASSYVCGQK*
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