Scaffold Ga0070733_10008775

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0070733_10008775

Scaffold Ga0070733_10008775

Overview

Basic Information
Taxon OID	3300005541 Open in IMG/M
Scaffold ID	Ga0070733_10008775 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6436
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016550	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070733_100087753	F016550	AGGAGG	MRTVTVRSCFFLCAIALALAVTAFADDQEKATTEIKKITSISVDANMRSIVNRTMADMLKVDRLDLVKQRQEMNLNYGALFLVHQLTAGGAKMEDIAAQLKAGQKIFDIANASHANWKQINAEAKKLNKKIDDNIEKYFTDTKKQSALNQADYDAKADKVPADTDISKGEYADAQNRYQHLHDQANAQLPTGDANLRNSGAGSGSPAGVSGPTTATVGAR*
Ga0070733_100087754	F016550	GGAGG	MKTATIRLFILFCTVALSLAAFADDQEKATKEIKKITSISVDSNMRAIVNRTMADMLKAKRLDLVKERQDMNLNYGDLFLAQQLVASGVKMDDIAAQLKSGKTMLDIANANHANWKEINSDAKKLNKKIDDNIEKSFTDAKKQAALNMADDYDAKADKVPADSNISKDEYAEAQARYTHLHEAAGAGLPTGDANGINQGPGVPPAVASGGKH*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.