Scaffold Ga0070732

Basic Information
Taxon OID	3300005542 Open in IMG/M
Scaffold ID	Ga0070732_10000430 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27305
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (60.98%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

27305

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (60.98%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001816	Metagenome / Metatranscriptome	630	N
F004426	Metagenome	438	N
F013876	Metagenome	267	Y
F017117	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070732_1000043018	F001816	N/A	LPLSPDSKREAEKRLTILKMIEVFADKCAKSTILNGPFGGDDRAFDRLLGPAGILTRTNLVTATMDGRVTYYGRTEAGKVYQQVLDMQLNFLDPYTGGEVWKK*
Ga0070732_1000043019	F013876	AGGAGG	MASDLLGVITTQALIAVFALFLAVASLVRIAVFEQRSLGFLGGPGVGTGAVSLLFETALTFVLFALSVVSIYNLLRLREKYLRLQILAEKLGR*
Ga0070732_1000043029	F004426	AGGA	MMDTELRVSTHKSLIKTLGRQYTDAAQFFVELLVNSWMWGEATRIEIWIPEHGSSIEYEEWGNGMDLADLRAFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGRELELQVHKGRFDRTITLTENLIDKQWDATDQSTWRPLRIIQAPLDHDGLKIRIRSLTKKPDPADVRRALLARANVLTLRGYGPFDVTVNGEQVKPEELRGSTLLPVNIATEYGKITGEIMITPISRVRAGISEAGISVQQKHITCLQHQFFGLDQYRTQGLSRIQGWVNADFLRRLPGGNDFERDSSPWRVFEKAMRGFVKNKVYKTLRQSASRREIRSIQHLNHEIAERLRRSLRKNIQVLSREMAKARPIPKITSVPGKTRKEIVLGERKHRRTKKHSHDATRSVVRLKDQILAFDVAHGGDRGQAYVEADKNGVRTVYVNMDHPMWDVEANLTPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDSLYNDALA*
Ga0070732_100004305	F017117	AGGA	LSAITDPVVLSTIVQTAVVTLTLVIFILSFRSQNKSIQEQAYQKVMDDYGDVMRRMSDVPELYRFQLELFDRAQLGGPDSKTPTREDMVIRNYVVEMYGFFERLHALYRRKWIDDDTWKQWAAFLELISRHPVFQAVHRSSGEMWDKPFVDYVSKILDRKRPADNSERQQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070732_10000430

Overview

Ecosystem & Geography

Associated Families

Sequences