NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070732_10000931

Scaffold Ga0070732_10000931


Overview

Basic Information
Taxon OID3300005542 Open in IMG/M
Scaffold IDGa0070732_10000931 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16561
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046305Metagenome / Metatranscriptome151N
F082495Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0070732_1000093112F082495AGGAGMSSLSVQNVMQHGTHARAMLSGGLGVFTSFLSLGWGLFAYNLPSAVNVTSSQSQSLMLLQVALAFFTLLGSGLMFAAYTAPGGTINILGALGTFIIGIYYASGIANAAKANDLTSLPLHFSIVYNGIVSIPTDRIVSTLLIVPVLPIAVLLLTSGLGGLSTYRSSRKISLV*
Ga0070732_1000093116F046305GGAMLTLGTLLLFGGGLMAIAATTPMGAGALITQAALVQMGWSIGIGTIISLLGAALILRNR*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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