NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070695_101209332

Scaffold Ga0070695_101209332


Overview

Basic Information
Taxon OID3300005545 Open in IMG/M
Scaffold IDGa0070695_101209332 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)622
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030494Metagenome185Y
F035366Metagenome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0070695_1012093321F030494N/AMDRHLPASLGGGPAVPRRSAPTVRRHDMVGTPLFWLTIAISICAVVPVVFFRAARPWIGSAILLMWTVFFTANAIRSRRTHSVISAPVYFLAAILLAATASGFVEVQIWMVWVIGAGII
Ga0070695_1012093322F035366N/ANKEAVLAALASVRQALENGPETAEVAHALDQCGRLELAIRQFHAEGLRFAAFTLLRMVLSHGTGFTEPVQLATRALKEALEVAGFPH*
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