NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066701_10194055

Scaffold Ga0066701_10194055


Overview

Basic Information
Taxon OID3300005552 Open in IMG/M
Scaffold IDGa0066701_10194055 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1242
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000921Metagenome / Metatranscriptome833Y
F029385Metagenome / Metatranscriptome188Y
F073366Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0066701_101940552F000921GAGGMGLPNKRLKLAGGERSKGSGVLCPWRARTVVHHPCAGGRVARSLSAIR*
Ga0066701_101940553F029385GGAGMESAIPVMAVIAAIAASVIVVRFATAFAKRLERRPPAVPPPDPAIRELRDALDAMQERLDFLERAVVAQRNQGGRALPAAGERADPPGERPS*
Ga0066701_101940554F073366GAGGMLLPNKRLKLTGGDRSKGSGVLCPGGHGLSSNGVAPAG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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