NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066701_10326892

Scaffold Ga0066701_10326892


Overview

Basic Information
Taxon OID3300005552 Open in IMG/M
Scaffold IDGa0066701_10326892 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)951
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004381Metagenome / Metatranscriptome440Y

Sequences

Protein IDFamilyRBSSequence
Ga0066701_103268921F004381GAGVPVTPTWTVEAAVKVQDNVALPDPVTLVGATEQEVLLVVRETTPAKPLTAVTVIAEVPAVPALTVTVVGLAAMVKSWTTNVTVTE*
Ga0066701_103268922F004381N/AVAKVHDSVALPEPVTLVGATEHDVLLVVRLTTPANPFSPVMVIAEVPALPALTVTVDGAATIVKSCTTYVTVTE*
Ga0066701_103268923F004381N/AKVHDNVELPEPVTLVGETLHEAVVLVTRLTTPTKPFRPVTVIVEVPAALTLTLTVVGLAAMVKSWTTYVTVTA*
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