NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066701_10515118

Scaffold Ga0066701_10515118


Overview

Basic Information
Taxon OID3300005552 Open in IMG/M
Scaffold IDGa0066701_10515118 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)739
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049118Metagenome / Metatranscriptome147N
F077068Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0066701_105151181F077068AGGAMDNDYKTNFVEPQENVALADVEQPRDDELTAKALEEIHSTERLSGFGRFAIKLQNFFQASKASQSKQGLSHLKMAPIMMSAGLLLLFATGLLFVLSKPESTVPSHFRQPTGLVGTDRQKTAAAAPAESPVTEDQLAGRDAGDDARLTGSTSKKQGIENSPPRRF
Ga0066701_105151182F049118N/AVNLITASNNPKDRKKPLVKTEPVEVTQSVVSSKQLSPGERATCLVAFKPPMHDSDQQVVLSISNRAMADKPAMYRLE*
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