NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066701_10524240

Scaffold Ga0066701_10524240


Overview

Basic Information
Taxon OID3300005552 Open in IMG/M
Scaffold IDGa0066701_10524240 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)731
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F007262Metagenome / Metatranscriptome354Y
F066970Metagenome / Metatranscriptome126Y
F090360Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0066701_105242401F066970GAGGVWVQHLSSLQFLTYVAFFAVVVGIVVTVVPGREPP
Ga0066701_105242402F000280GGAGMRRRNMPARPLAGYRDVGPDVRHSRRTLVRAWVILAVLVVVYLVWTLLVYFLEPGLR*
Ga0066701_105242403F090360GGAMAAAPPFVSYSTMSEAVVPLEDWPHLYASLQAHKAHVQEYPGCQRFEAWVDVEENGVRVHCYTTWDTVEQLEVFVERGYTFERLLADVGMPAAQRSLVMEKLF*
Ga0066701_105242404F007262N/ATWAGFTTELAGPASSFFLLLTAILVGFAVAIVVGHIVDGQIF*
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