NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066695_10229589

Scaffold Ga0066695_10229589


Overview

Basic Information
Taxon OID3300005553 Open in IMG/M
Scaffold IDGa0066695_10229589 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1169
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005826Metagenome / Metatranscriptome389Y
F008418Metagenome333Y

Sequences

Protein IDFamilyRBSSequence
Ga0066695_102295891F005826AGGAGGMEGARAPESPYWIRYIVAFWAGEKLKWARDNVLVACVCSLAPGLIAAGIGAALSDHKWRTVTYATLLTYGGLFALFLMWRLVATPLELDRERQRFINGLTKRLAFAKFQLATLQASPPAVDVEILELHVQAADTALAP
Ga0066695_102295893F008418N/AGIDCKFWVGDDGWNGSSEDLSITVQAPSFEQAKSDMELALGRHIESLLHERHGTKAEHAA

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