NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066661_10003928

Scaffold Ga0066661_10003928


Overview

Basic Information
Taxon OID3300005554 Open in IMG/M
Scaffold IDGa0066661_10003928 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6706
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012334Metagenome281Y
F015579Metagenome / Metatranscriptome253Y
F019106Metagenome231N

Sequences

Protein IDFamilyRBSSequence
Ga0066661_100039281F015579AGGTGGMTGYLCPKPRARQYVYAQIERSLENNGGEVHLGSDSKKPPRPRHRFSFSGQSKRPEGSSMPRAANVTRDDILNSLTKHAHPQEPEQTVPETEEAAQFQGPNETAVEVRARNRGSARGALVIFLGGFVAVWLYGYVTGAYEIPYLRGVTQNPAVQVGVQLGSSNPILFGAVSLSVLLGAIYLLHRKKN*
Ga0066661_100039283F019106AGCAGMASQVPLLRLAKFLVLIGGIVLLIGGILQAIDVRALVDFGTNLARLGSLTGIVIGILVGILALVGSREVADPAWSFILLILGLFVGSLGGILVFIGGLIGLVAHFVKV*
Ga0066661_100039284F012334N/AMSSKRPVELGRDARLFLLFLSEINLVMGALFFVYPSLVVDLWPWPVKALAIRFIGAIFLAIAFGCWSALRAKIWQRAKILVLVGGTFFGITSIVAIVLALSQGVGYVVSSWTGYFLVANLGNFYLLNRYGWPRKPQDRLGASQPWKTARWFFRIQTVVVGVFGIMMLLLPSIAQAQFWPWQVAIPTLQMFAGLFLATCLATGWASLQTDIGRIRVLLPLDVIFPSLALLAVGIHWDVISIQSPSVLVTGVWVFIYAFVAVGSAYLYFSSRKTGVM*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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