NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066661_10260745

Scaffold Ga0066661_10260745


Overview

Basic Information
Taxon OID3300005554 Open in IMG/M
Scaffold IDGa0066661_10260745 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1072
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068006Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0066661_102607451F068006N/AVSSVRRGSELSLRSLVGGPQRIGQRDRMFSLSVRRLDIVIGRLLPDGARPDGGGRHLQALGGMGILPRDLREAGEALFPGGPVGPGSMPLFPERLLSQFAAQSSPPVFQTADGDDYRWCETTIEVGSAGKAWPLLTRPCQPPPEPPIKDADGYYAYLESLPERFWTRNTPDEVEYAGELQRGRLTNLGTIRRGRTGFTVNANSVRRAADLEAVVLAAASAAGCPASVTRRGTQTAGELTGTPPEAEDGPDSREATCRRLGLEGLPSPEPRRLILEGYFLPIEHGLDDVAREINRELGYLSVLESRDAAGMTPAEAVTAGGAALDRVLAMLDDCEWRLRRAEGEGKDTSMLPDPDELR
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