Scaffold Ga0066692

Basic Information
Taxon OID	3300005555 Open in IMG/M
Scaffold ID	Ga0066692_10000272 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005555 Open in IMG/M

Scaffold ID

Ga0066692_10000272 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16175
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (60.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

16175

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (60.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003430	Metagenome	487	Y
F007714	Metagenome / Metatranscriptome	346	Y
F086908	Metagenome	110	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0066692_1000027213	F007714	N/A	MPPETVPASSRRARRVALLLLGASLVLAAGGALWFLRFASQVRRDPAFIYREPATLEKLLKRANDAERAGDRATAITTYRFVMAVGQGAGADLAPYVVAARAGLSRLGAVDTLPGRPR*
Ga0066692_1000027215	F086908	N/A	MVTVCTVLPPPERPRLDAAGDGCFTTLHTSSFRDALR
Ga0066692_100002727	F003430	GGAG	MRRSGGRAVEWSVGRLVAALRSAGPSFRLTALLLLCGCQAQARRLLLLDLALSDPALLNGTVRPWHDEGYTVEYRRFYPHLARTDLERYRVLLFLLGREPEAPSDALTAGDLALLTEWVLRGGVVVLGYDADGEGYLDRWTANRWLEFAGTGISIGDRLLEDTTVRALTTTGRPQPWAEGRPMGDEPLGSVFDPFPLDRNDVLATRDSSQLLAVTSRHAFVRAPRTPAPRARAGVVAAARIGDGLVVVISRHALGALGPQFRSTTAPAQQLDALDRTREFLGAVARWTRRPAEWAHVPPAARGGPLSLAQAPVPVELSPPLMSPPTGVDTIALPLLPDPKLARATSTPEWLRQQGMRVLWTPLFATRDGRRAVRSGASLDSLVALLDAGGFNLLAGDAGPESTDSLHTYWEERLAVRRAWADAVKRLQPTSVAWIPVHDLDKARHATADSSRGARGEALAAPCALDSILWAEGLPSAYGALGRLAAEQRTLVIALGLDIGGPRSYSMGQEFCDAAWRRGLAGLIRAGAAGGGWDSLAYAARYPALRDAGLLPRYYRALEDEVAARATVLRDRVLKQRRDLYFAFRLAQPPADWFTLGLLRGFGLPDRPLLLFTPEVWTRDLLALYRARGLNMVHAIALVPPSLRARDWSGVKRLAFYESDGFWVAPEEPAGPGAGRRLPPDSLGRLLRRLVR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066692_10000272

Overview

Ecosystem & Geography

Associated Families

Sequences