NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066692_10002790

Scaffold Ga0066692_10002790


Overview

Basic Information
Taxon OID3300005555 Open in IMG/M
Scaffold IDGa0066692_10002790 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7251
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020335Metagenome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0066692_100027902F020335GGAGLGADIPKSMMLMAGQNPYSSNPWASPYPPFLLAMVGSIIRVTSGSIMLTPATIGLISRNVRMAGLLADAIVALLVFLALRARRVSGLSALVPSALLLTLPSISLSPYYWFNSDVFGYPILAGSVLALIAGRYFVGSSLLATSTIFKIHPILAIPLVLVWLVRRSGFPKSLPTVITTGSILVLGLVVPVILPGYLESVLGFNLSSGFGGGTSSFTMMNLLYAIFPSLFHLSLPTIVENQVWLAATASLFVAALGIVWSRARELSPADIVAIGLLVWLIPLRQIYTHYLVWAVVPFLMRGRLRQTLIVGSLLELANTMSSWSWDLPPDPFPVLSTAYGFFATSLVYLCVSVTALVFIVREIGVRQQFAVRLVNGSMQLERHLVPVIVSA*
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