NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066692_10009168

Scaffold Ga0066692_10009168


Overview

Basic Information
Taxon OID3300005555 Open in IMG/M
Scaffold IDGa0066692_10009168 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4595
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011480Metagenome290Y
F020149Metagenome225N

Sequences

Protein IDFamilyRBSSequence
Ga0066692_100091682F020149AGGLSTDTISSHNRRNLLVCFVATFILFFIGSSTVLPILASANRILPGNAQVGLLTLALSATLTLVISLIGIPIGLTYMYFFGGVVSTKAIKLYLFITKGTHVIGSKTSELSTVQASRGLKLKLRRQVMYFGFILAVVVPFATYEANHKDIPFFSPLARTTDIVSLITQDFVTLTMTASLMVPLVALALPYFGGLRLRSIDVGPFHTTVLSMIIGASGGFSLLYTALTRPIFSILAYLFLLLIGVCWCFAIGCNLAADPADRHIARIVLAQKVSSRVVSSKIWLENPPGKFREV*
Ga0066692_100091686F011480N/ALHASVEADLKTQFQFEEKVDLAIGKSVKATLRFYNELRKQALARSEVGNPPSFETFSTMATGLMEASKQVDLDRLKNLSMRDLLERTWAQKLLNYSTKRLVKDSYETLTKRY*
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