NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066698_10178434

Scaffold Ga0066698_10178434


Overview

Basic Information
Taxon OID3300005558 Open in IMG/M
Scaffold IDGa0066698_10178434 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1446
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025473Metagenome / Metatranscriptome201N
F100794Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0066698_101784341F100794N/AALAVSRPALCAQAPPPRLEPGARVRLEVSSLGRITGTLVAWEPDTLVVREDGQAEGLRLIILADSVSRIDVRRERRMTLEGAGVGLLVGTLLAVTASPDEVDENGDCTPLACLAYKVSPKLDTRIAVLGLVGALAGVIVGSETKTHTWSRVPLERLDVGPAPGGGLAFGVRISF*
Ga0066698_101784343F025473N/ASTKLILSGFLGVLACFALVLIGAIAGNRGAVSVTVTLLGIAALGLVVVLIILAAGFVLAIRGLYRQPDLRTWSNIAVAIGGLGGLALALAMLASALAARGQL*
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