NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066700_10462873

Scaffold Ga0066700_10462873


Overview

Basic Information
Taxon OID3300005559 Open in IMG/M
Scaffold IDGa0066700_10462873 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)889
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008484Metagenome / Metatranscriptome332Y
F019463Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0066700_104628731F019463AGGAGGMVELRFRIRNNVFNPQDPPRKSTIRPLSLCLPSVEEAALLGEVDETGRVIPRRGVFFLTNLRTGPVIEGFEDCALGEFVKAQLEGLSQDGEPPVKCEVHGLDPFLEMAESDQADRLRDLISVCEFRSNEFTPESAIRFLKESG
Ga0066700_104628732F008484N/AMTTFTGAELKLVRKLAAEPPLSVLQIKQSCPIHSVCNPLPVFRIYKIDDASFEAQWNGYHESGPKQIFRFADAA*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.