NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066700_10641594

Scaffold Ga0066700_10641594


Overview

Basic Information
Taxon OID3300005559 Open in IMG/M
Scaffold IDGa0066700_10641594 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)736
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000415Metagenome / Metatranscriptome1168Y
F010453Metagenome / Metatranscriptome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0066700_106415941F000415GGAGMSIQFDPELSAAVLGFNGESVLYCQGISDTVSREYARDYARMLLNRAQGFEFSLPRIPQGLFEPNRNLIRSTLERMAEKYFPAK
Ga0066700_106415942F010453N/AWPLKSGLTGNAGVLMRISQWAKVDARWYLGVRCRKCETPILFALDRSEGEAQPAAPGKLLLTCPRPECRHRADYSKATVSRFQKPPRAPDETGRNL*

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