NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066699_10038571

Scaffold Ga0066699_10038571


Overview

Basic Information
Taxon OID3300005561 Open in IMG/M
Scaffold IDGa0066699_10038571 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2843
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002548Metagenome / Metatranscriptome549Y
F022212Metagenome215Y
F056041Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0066699_100385712F002548N/AMAKSEAQTVTEVRSAFVERRRLRRIRMIVELTHNLISSDVTVSHREAHCLIHCARKAILQLYPEFEDRYERVIRPHFERILAERWPNEEPLNPTDCETVN*
Ga0066699_100385715F022212N/AMRRLLAFSLFLIAACSADNSIDNAPEWLHVLHHKKAAVAPSATPRDKQVYADSLAAFVRKHPAHPRAREVYQSVQLEFARELTSLGRYQDAIRFYRAVLSSDPMNAAALRGVSDAFEHLAISRQKLLTLQQGMSQREVARLLGQPIPGWTDRTERRDSTVESWYYRTTEGGVAGVYFRDGALFAAEENSHSKLVPLAQAPPR*
Ga0066699_100385716F056041GGAGGVAVRGDEVATSIDKHVRETIEKLVGEMRSSIEDVREAVDQQLRAALQSVQADVNSVSVLPHIQKSIKDLEHGLTGAAPAPRSTADAGRVKRAVQAVEHGTSQVDILNALLEQSIEFGSRAALLILRGETFS
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