NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0058697_10027373

Scaffold Ga0058697_10027373


Overview

Basic Information
Taxon OID3300005562 Open in IMG/M
Scaffold IDGa0058697_10027373 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2045
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008150Metagenome / Metatranscriptome338Y
F059714Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0058697_100273732F008150GAGLSTERYAIQARTRSDGLRLLRTINDTQAHGQEGTRAYPPGAAQGAGLEVGSERYEAAMAYLVEQAALRKDERMAFDEDGRDQHLRGYGLYIFTSRALKLLDGLHTP*
Ga0058697_100273733F059714AGGAGMRKKLMLALGVVVVLVPLVGAAALAATGELIQCKSVPCYGAKGDDKILERVGNGKQDIIIPTGGDDLILANKYTGDQDIIKRGGGEDKINVADGDILDLANGGKGRDICIVDARNEVGKSCAVVQVKRR*
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